viszualizers and digital output
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parent
96d23c1b59
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62f1861de0
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@ -1,26 +1,46 @@
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#include <avr/pgmspace.h>
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#include "stimulation_pattern.h"
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const int stimulationPin = 5;
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const int delayBetweenStimulations = 10; // milliseconds
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const bool DEBUG = true; // Set to true to enable serial output
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const bool USE_DIGITAL = true; // Set to false to use analog output
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const int stimulationPin = 5; // PWM-capable pin
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const unsigned long delayBetweenStimulations = 1000; // microseconds (1ms delay for more stable serial transmission)
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const int threshold = 50; // Threshold for converting analog to digital
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void setup() {
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pinMode(stimulationPin, OUTPUT);
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Serial.begin(9600);
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Serial.begin(115200); // Increased baud rate for faster output
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}
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// Function to convert analog value to digital
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bool analogToDigital(uint8_t analogValue) {
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return analogValue >= threshold;
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}
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// Function to write output (digital or analog)
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void writeOutput(uint8_t value) {
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if (USE_DIGITAL) {
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digitalWrite(stimulationPin, analogToDigital(value) ? HIGH : LOW);
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} else {
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analogWrite(stimulationPin, value);
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}
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}
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void loop() {
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for (uint16_t i = 0; i < PATTERN_SIZE; i++) {
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uint8_t stimulationValue = pgm_read_byte(&stimulation_pattern[i]);
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analogWrite(stimulationPin, stimulationValue);
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// Print the current stimulation value for debugging
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Serial.print("Applying stimulation: ");
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writeOutput(stimulationValue);
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// Print the value based on the mode
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if (USE_DIGITAL) {
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Serial.println(analogToDigital(stimulationValue) ? 255 : 0);
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} else {
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Serial.println(stimulationValue);
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delay(delayBetweenStimulations);
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}
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// Add a longer delay at the end of each complete pattern
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delay(1000);
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delayMicroseconds(delayBetweenStimulations);
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}
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// Remove the long delay at the end to continuously send data
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}
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102
decode_serial_digit.py
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102
decode_serial_digit.py
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import serial
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import numpy as np
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import matplotlib.pyplot as plt
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from serial.tools import list_ports
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import time
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import sys
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# Serial port configuration
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DEFAULT_PORT = 'COM20'
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BAUD_RATE = 115200
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TIMEOUT = 5 # 5 seconds timeout
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# MNIST digit size
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DIGIT_SIZE = 28
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def find_arduino_port():
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ports = list_ports.comports()
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for port in ports:
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if 'Arduino' in port.description:
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return port.device
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return None
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def read_serial_data(port, baud_rate, timeout):
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try:
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with serial.Serial(port, baud_rate, timeout=timeout) as ser:
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print(f"Connected to {port}")
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data = []
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start_time = time.time()
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while len(data) < DIGIT_SIZE * DIGIT_SIZE:
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if time.time() - start_time > timeout:
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print("Timeout: No data received for 5 seconds.")
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break
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try:
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line = ser.readline().decode('ascii').strip()
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if line:
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value = int(line)
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if 0 <= value <= 255: # Ensure value is in valid range
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data.append(value)
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start_time = time.time() # Reset the timeout
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else:
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print(f"Warning: Received out-of-range value: {value}. Skipping.")
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except (UnicodeDecodeError, ValueError) as e:
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print(f"Received invalid data: {e}. Skipping.")
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return np.array(data)
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except serial.SerialException as e:
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print(f"Error opening serial port {port}: {e}")
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return np.array([])
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def plot_digit(data):
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if len(data) < DIGIT_SIZE * DIGIT_SIZE:
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print(f"Warning: Received only {len(data)} data points. Padding with zeros.")
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data = np.pad(data, (0, DIGIT_SIZE * DIGIT_SIZE - len(data)), 'constant')
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digit = data.reshape(DIGIT_SIZE, DIGIT_SIZE)
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# Create a larger figure (doubled size)
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plt.figure(figsize=(10, 10))
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plt.imshow(digit, cmap='gray', interpolation='nearest')
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plt.title("Decoded Digit", fontsize=24)
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plt.axis('off')
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# Add text annotations for each pixel value
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for i in range(DIGIT_SIZE):
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for j in range(DIGIT_SIZE):
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value = digit[i, j]
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plt.text(j, i, f'{value}', ha='center', va='center', color='red', fontsize=6)
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plt.tight_layout()
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plt.show()
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def main():
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port = DEFAULT_PORT
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if not serial.tools.list_ports.comports(include_links=False):
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print("No serial ports found. Please check your connections.")
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return
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if DEFAULT_PORT not in [p.device for p in serial.tools.list_ports.comports()]:
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print(f"Warning: {DEFAULT_PORT} not found. Attempting to find Arduino port.")
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port = find_arduino_port()
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if not port:
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print("Arduino not found. Please specify the COM port manually.")
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return
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print("Reading data from serial port...")
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data = read_serial_data(port, BAUD_RATE, TIMEOUT)
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if len(data) > 0:
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print(f"Received {len(data)} data points. Plotting digit...")
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plot_digit(data)
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else:
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print("No data received. Please check the Arduino connection and code.")
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if __name__ == "__main__":
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try:
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main()
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except KeyboardInterrupt:
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print("\nScript terminated by user.")
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except Exception as e:
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print(f"An unexpected error occurred: {e}")
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finally:
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print("Script execution completed.")
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sys.exit(0)
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2
stimulation_pattern.h
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2
stimulation_pattern.h
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const PROGMEM uint8_t stimulation_pattern[] = {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 55, 148, 209, 253, 253, 113, 87, 148, 55, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 87, 232, 252, 253, 189, 209, 252, 252, 253, 168, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 4, 57, 242, 252, 190, 65, 5, 12, 182, 252, 253, 116, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 96, 252, 252, 183, 14, 0, 0, 92, 252, 252, 225, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 132, 253, 252, 145, 14, 0, 0, 0, 215, 252, 252, 79, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 126, 253, 246, 176, 9, 0, 0, 8, 78, 245, 253, 129, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 16, 232, 252, 176, 0, 0, 0, 36, 201, 252, 252, 169, 11, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 22, 252, 252, 30, 22, 119, 197, 241, 253, 252, 250, 77, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 16, 231, 252, 253, 252, 252, 252, 226, 227, 252, 231, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 55, 234, 253, 217, 137, 42, 24, 192, 252, 143, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 61, 255, 253, 109, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 71, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 71, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 106, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 45, 255, 253, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 218, 252, 56, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 96, 252, 189, 42, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 14, 184, 252, 169, 11, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 14, 146, 252, 42, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0};
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const uint16_t PATTERN_SIZE = 784;
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23
visualize_digit.py
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23
visualize_digit.py
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def visualize_digit(pattern):
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# Define ASCII characters for different intensity levels
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chars = ' .:-=+*#%@'
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# Convert the pattern to a 28x28 grid
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grid = [pattern[i:i+28] for i in range(0, len(pattern), 28)]
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# Create the visualization
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visualization = ''
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for row in grid:
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for pixel in row:
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# Map the pixel value (0-255) to an ASCII character
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char_index = min(int(pixel / 28), 9)
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visualization += chars[char_index]
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visualization += '\n'
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return visualization
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# The stimulation pattern from stimulation_pattern.h
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stimulation_pattern = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 55, 148, 209, 253, 253, 113, 87, 148, 55, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 87, 232, 252, 253, 189, 209, 252, 252, 253, 168, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 4, 57, 242, 252, 190, 65, 5, 12, 182, 252, 253, 116, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 96, 252, 252, 183, 14, 0, 0, 92, 252, 252, 225, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 132, 253, 252, 145, 14, 0, 0, 0, 215, 252, 252, 79, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 126, 253, 246, 176, 9, 0, 0, 8, 78, 245, 253, 129, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 16, 232, 252, 176, 0, 0, 0, 36, 201, 252, 252, 169, 11, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 22, 252, 252, 30, 22, 119, 197, 241, 253, 252, 250, 77, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 16, 231, 252, 253, 252, 252, 252, 226, 227, 252, 231, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 55, 234, 253, 217, 137, 42, 24, 192, 252, 143, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 61, 255, 253, 109, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 71, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 71, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 106, 253, 252, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 45, 255, 253, 21, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 218, 252, 56, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 96, 252, 189, 42, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 14, 184, 252, 169, 11, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 14, 146, 252, 42, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
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# Visualize the digit
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print(visualize_digit(stimulation_pattern))
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