make and build

Makefile

@@ -0,0 +1,55 @@
+# Makefile for Arduino project
+
+# Detect OS
+ifeq ($(OS),Windows_NT)
+    ARDUINO_CLI := arduino-cli.exe
+    RM := del /Q
+    PORT ?= COM20
+else
+    ARDUINO_CLI := arduino-cli
+    RM := rm -f
+    PORT ?= /dev/ttyACM0
+endif
+
+# Arduino CLI configuration
+BOARD ?= arduino:avr:nano:cpu=atmega328old
+SKETCH := apply_stimulation/apply_stimulation.ino
+
+# Python configuration
+PYTHON := python
+
+# Targets
+.PHONY: all generate compile upload clean
+
+all: generate compile upload
+
+generate:
+	$(PYTHON) gen_stimulat.py
+
+compile:
+	$(ARDUINO_CLI) compile --fqbn $(BOARD) $(SKETCH)
+
+upload:
+	$(ARDUINO_CLI) upload -p $(PORT) --fqbn $(BOARD) $(SKETCH)
+
+clean:
+	$(RM) apply_stimulation/build
+	$(RM) stimulation_pattern.h
+
+# Help target
+help:
+	@echo "Available targets:"
+	@echo "  all      - Generate pattern, compile and upload the sketch"
+	@echo "  generate - Generate the stimulation pattern"
+	@echo "  compile  - Compile the sketch"
+	@echo "  upload   - Upload the compiled sketch to the Arduino"
+	@echo "  clean    - Remove build files and generated pattern"
+	@echo "  help     - Display this help message"
+	@echo ""
+	@echo "You can specify the Arduino port and board using the PORT and BOARD variables:"
+	@echo "  make upload PORT=COM20 BOARD=arduino:avr:nano:cpu=atmega328old"
+	@echo ""
+	@echo "Default board is set to Arduino Nano with old bootloader (atmega328old)"
+
+# Default target
+.DEFAULT_GOAL := help

README.md

@@ -15,7 +15,89 @@ curl -fsSL https://raw.githubusercontent.com/arduino/arduino-cli/master/install.
 ```
 
 ## Usage
-After installation, you can use Arduino CLI to compile and upload sketches to your Arduino board. For example:
+
+### Using Make (Linux and Windows with Make installed)
+We've provided a Makefile to simplify the process of compiling and uploading sketches to your Arduino board. Here's how to use it:
+
+1. Generate the stimulation pattern, compile, and upload the sketch:
+   ```
+   make all
+   ```
+
+2. Only generate the stimulation pattern:
+   ```
+   make generate
+   ```
+
+3. Only compile the sketch:
+   ```
+   make compile
+   ```
+
+4. Only upload the compiled sketch:
+   ```
+   make upload
+   ```
+
+5. Clean the build files and generated pattern:
+   ```
+   make clean
+   ```
+
+You can specify a different port or board by using the PORT and BOARD variables:
+
+```
+make upload PORT=COM3 BOARD=arduino:avr:uno
+```
+
+The default board is set to Arduino Nano with old bootloader (atmega328old). To see all available options, run:
+
+```
+make help
+```
+
+### Using PowerShell Script (Windows without Make)
+For Windows users who don't have Make installed, we've provided a PowerShell script (build.ps1) that mimics the Makefile functionality. Here's how to use it:
+
+1. Generate the stimulation pattern, compile, and upload the sketch:
+   ```
+   .\build.ps1 all
+   ```
+
+2. Only generate the stimulation pattern:
+   ```
+   .\build.ps1 generate
+   ```
+
+3. Only compile the sketch:
+   ```
+   .\build.ps1 compile
+   ```
+
+4. Only upload the compiled sketch:
+   ```
+   .\build.ps1 upload
+   ```
+
+5. Clean the build files and generated pattern:
+   ```
+   .\build.ps1 clean
+   ```
+
+You can specify a different port or board by using the -PORT and -BOARD parameters:
+
+```
+.\build.ps1 upload -PORT COM3 -BOARD arduino:avr:uno
+```
+
+To see all available options, run:
+
+```
+.\build.ps1 help
+```
+
+## Manual Arduino CLI Usage
+If you prefer to use Arduino CLI directly, you can still use the following commands:
 
 ```
 arduino-cli compile --fqbn arduino:avr:nano:cpu=atmega328old your_sketch.ino
@@ -31,7 +113,7 @@ The goal of this project is to create a system that generates and applies stimul
 The project workflow is as follows:
 
 1. Generate a stimulation pattern from MNIST data (gen_stimulat.py)
-2. Upload this pattern to an Arduino board (using Arduino CLI)
+2. Upload this pattern to an Arduino board (using Arduino CLI, Makefile, or PowerShell script)
 3. The Arduino applies the stimulation pattern to the nano fiber sample (apply_stimulation.ino)
 4. Receive and decode the response data from the nano fiber reservoir (decode_serial_digit.py)
 5. Visualize the received data to interpret the reservoir's response (visualize_digit.py)

build.ps1

@@ -0,0 +1,51 @@
+# PowerShell script to mimic Makefile functionality
+
+# Default values
+$ARDUINO_CLI = "arduino-cli.exe"
+$PYTHON = "python"
+$PORT = "COM20"
+$BOARD = "arduino:avr:nano:cpu=atmega328old"
+$SKETCH = "apply_stimulation/apply_stimulation.ino"
+
+function Generate {
+    & $PYTHON gen_stimulat.py
+}
+
+function Compile {
+    & $ARDUINO_CLI compile --fqbn $BOARD $SKETCH
+}
+
+function Upload {
+    & $ARDUINO_CLI upload -p $PORT --fqbn $BOARD $SKETCH
+}
+
+function Clean {
+    Remove-Item -Path "apply_stimulation/build" -Recurse -ErrorAction SilentlyContinue
+    Remove-Item -Path "stimulation_pattern.h" -ErrorAction SilentlyContinue
+}
+
+function Help {
+    Write-Host "Available commands:"
+    Write-Host "  .\build.ps1 all       - Generate pattern, compile and upload the sketch"
+    Write-Host "  .\build.ps1 generate  - Generate the stimulation pattern"
+    Write-Host "  .\build.ps1 compile   - Compile the sketch"
+    Write-Host "  .\build.ps1 upload    - Upload the compiled sketch to the Arduino"
+    Write-Host "  .\build.ps1 clean     - Remove build files and generated pattern"
+    Write-Host "  .\build.ps1 help      - Display this help message"
+    Write-Host ""
+    Write-Host "You can specify the Arduino port and board using the -PORT and -BOARD parameters:"
+    Write-Host "  .\build.ps1 upload -PORT COM3 -BOARD arduino:avr:uno"
+    Write-Host ""
+    Write-Host "Default board is set to Arduino Nano with old bootloader (atmega328old)"
+}
+
+# Main execution
+switch ($args[0]) {
+    "all" { Generate; Compile; Upload }
+    "generate" { Generate }
+    "compile" { Compile }
+    "upload" { Upload }
+    "clean" { Clean }
+    "help" { Help }
+    default { Help }
+}